PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_11453.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family HSF
Protein Properties Length: 327aa    MW: 36058.9 Da    PI: 6.2452
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_11453.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind100.12e-31251162102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   F+ k+y+++ d++++ l++w + +nsf+v d   f++ +Lp +Fkh nf+SFvRQLn+YgF+kv+ ++         weF+h+sF +g+++ll +i 
  MLOC_11453.1  25 FVAKTYQMVCDPRTDALVRWGKGNNSFLVPDVAGFSQLLLPCFFKHGNFSSFVRQLNTYGFRKVHPDR---------WEFAHESFLRGQTHLLPRIV 112
                   9****************************************************************999.........******************** PP

                   XXXX CS
  HSF_DNA-bind  99 rkks 102
                   r+k+
  MLOC_11453.1 113 RRKK 116
                   *987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.109.4E-3421114IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004154.0E-4921114IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.21E-3122114IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000564.3E-162548IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004473.0E-2725114IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.3E-166375IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406488IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.3E-167688IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MDSLHTELAL GLIGCGHGDF QTAPFVAKTY QMVCDPRTDA LVRWGKGNNS FLVPDVAGFS  60
QLLLPCFFKH GNFSSFVRQL NTYGFRKVHP DRWEFAHESF LRGQTHLLPR IVRRKKRGEA  120
GVGASCSSAV GGAEQHQHVV ANMGDEVEEE EEEEESEALL EEVQRLRKEQ TAIGEQLAKM  180
SRRLQATERR PDRLMSFLAR LAEDPSATSL HLLEQAAEKK RQRMQFPSRD FTSLPIALPL  240
QPAPSPPPPP LLALGDAAMG GVRVWQWAEP IPLKLTTFEQ PSASSGVQQV PEFESGRSGS  300
GSGMGLTDGG TAVETPFPFC LLGQCFF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A3e-212511420120Heat shock factor protein 1
5d5u_B3e-212511429129Heat shock factor protein 1
5d5v_B3e-212511429129Heat shock factor protein 1
5d5v_D3e-212511429129Heat shock factor protein 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF2085530.0KF208553.1 Triticum aestivum heat shock factor C1e (HsfC1e) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003566902.11e-135PREDICTED: heat stress transcription factor C-1a-like
SwissprotQ6VBA41e-124HFC1A_ORYSJ; Heat stress transcription factor C-1a
TrEMBLM0UJ860.0M0UJ86_HORVD; Uncharacterized protein
STRINGMLOC_11453.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12137394
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24520.16e-53heat shock transcription factor C1